Publications

《热带作物种质资源学》

王文泉、刘国道、夏志强 主编

MeSUT1a is essential for sucrose transport and apoplastic phloem loading in cassava (Manihot esculenta Crantz)

Xu Shen , Meizhen Hu , Yanmei Li , Haozheng Li , Ke Li , Weitao Mai , Sirong Jiang , Yuanchao Li , Mengtao Li , Huaifang Zhang , & Yajun Li , Xin Chen , Haiyan Wang , Wenquan Wang

Reply to Stitt et al.: Revisiting cassava photosynthesis-Evidence for C4-facultative traits in a C3 plant

Haozheng Li, Shujuan Wang, Xianhai Xie, Xu Shen, Haiyan Wang, Xincheng Zhou, Liangye Xu, Zhiqiang Xia, Jingfa Xiao, & Mabrouk El-Sharkawy, Fei Chen, Wenquan Wang

Metabolic Enzyme MeHNL11 Regulates MeCAS1b Transcription for Cyanide Reutilization in Response to Nitrate Deficiency in Cassava

Weitao Mai, Ruxue Bao, Xiaocheng Liu, Mengtao Li, Jinling Zhao, Huaifang Zhang, Yuan Yao, Haiyan Wang, Wenquan Wang, & Changying Zeng, Xin Chen

CassavaMDB: an integrated multi-omics database for functional genomics and molecular breeding in cassava

Zhenhuan Liu, Zhuang Yang, Ke Deng, Jie Zhang, Xu Shen, Miaoni Fan, Hongxu Zhai, & Wenquan Wang, Zhiqiang Xia, Jie Luo, Sirong Jiang

The reference genome sequence of the scarlet follicle, Sterculia lanceolata, reveals a paleo-polyploidization and its impact on fruit quality and fruit dehiscence

Y Hu, Y Zhang, H Zhang, J Zhang, G Guo, K Yang, ... & F Chen

Chromosome-scale genomes of water lilies provide evolutionary insights into the aquatic adaptation of angiosperms

H Zhang, XC Huang, G Liu, Y Liang, J Zhang, Y Zhou, ... & F Chen

Water lilies illuminate angiosperm evolution and inspire crop improvement

J Zhang, Y Liang, & F Chen

A telomere-to-telomere genome assembly of Nymphaea minuta provides details into the developmental transcriptome atlas and adaptive regulatory mechanisms

H Chen, Y Liang, JY Xue, & F Chen

Water lily complete genomes illuminate the innovations of water lilies and early angiosperms

J Zhang, Y Liang, G Liu, Y Bai, XC Huang, Y Bai, ... & F Chen

Toward a networked central dogma: protein specificity reshapes molecular encounters across evolution

Z Tong & F Chen

Heat shock protein 20 gene family involved in the temperature adaptation of typical Euphorbiaceae

L Zheng, MKA Ambuyoc, J Jin, Y Chen, AH Abdoulaye, Z Zhang, ... & Y Chen

Beyond linearity: a multiscale pangenome map for complex sugarcane

J Zhang, Q Wu, J Li, F Ye, F Chen, & Y Que

Secondary metabolites and biological activities of water lilies: a comprehensive review

J Li & F Chen

iGS: A Zero-Code Dual-Engine Graphical Software for Polygenic Trait Prediction

J Zhang & F Chen

Overexpression of the Mentha canadensis McTTG2 gene positively regulates trichome development and proanthocyanidins biosynthesis in transgenic Arabidopsis

Y Bai, Y Xu, X Qi, L Li, X Yu, H Fang, ... & C Liang

Three-chain empowered sugarcane bio-breeding in China

P Wang, Q Wu, W Wang, D Wang, J Wang, T Sun, ... & Y Que

Gap-free genome of Durio zibethinus cv. Chuongbo

S Wang, J Zhang, G Guo, Z Li, F Chen, & W Wang

The binary stars of the water lily world: Nymphaea 'Sirius A' and N. 'Sirius B'

J Zhang, J Li, & F Chen

CassavaDB: an integrated multi-omics resource for functional genomics and molecular breeding of cassava

W Dai, X Feng, L Zhao, G Bai, Z Lin, W Hu, ... & F Chen

FlowerBase: An integrated multi-omics database for ornamental flowering plants

C Wang, Z Li, J Zhang, J Zhang, Y Liang, H Zhang, ... & F Chen

Tamarindus indica telomere-to-telomere genome reveals tartaric acid accumulation in fruit

Z Li, S Wang, S Wang, C Wang, H Zhang, F Chen, & W Wang

Integrated Multi-Omics Reveals Anthocyanin Biosynthesis Control During Fruit Peel Color Development in Jaboticaba 'Essart'

Z Lin, K Deng, F Chen, & L Zhao

Phased telomere-to-telomere super-pangenome: definitive reference genome in plants

J Zhang, Y Zheng, & F Chen

Sugarcane genomics: Origin, evolution, and domestication

Z Zhang, Q Wu, D Wang, Y Zhang, F Chen, & Y Que

Chromosome-Level Genome assembly and annotation of purple nutsedge (Cyperus rotundus Cyperaceae)

W Wen, Y Zhang, Y Feng, R Xu, T Li, Z Yu, ... & Y Chen

HBIcloud: A comprehensive, user-centric platform for integrative multi-omics analysis

S He, Y Luo, W Dong, J Fang, W Wang, M Luo, & F Chen

StMYB113b is a key regulator of red skin pigmentation in potato tubers

L Zhao, K Deng, Y Bao, C Lv, M Xu, J Wang, ... & F Wang

Transcriptome and metabolome analysis reveals the mechanism of key nutrient formation in Hainan oil-camellia (Camellia hainanica) growth cycle

Y Ding, Q Wu, Z Li, Q Zhong, S Zhou, F Chen, ... & H Hu

From Code to Life: The AI-Driven Revolution in Genome Editing

Z Li, WU Khan, G Bai, C Dong, J Wang, Y Zhang, ... & F Chen

Cassava common mosaic virus (CsCMV): recent advances and future directions

AA Hamidou, Y Chen, H Wang, MA Mahaman, F Chen, & Y Chen

Camellia wuzhishanensis (Theaceae), a new decaploid species discovered in the tropical rainforest of Wuzhishan, Hainan, China

C Xie, S Zhang, Q Wu, M Zhang, S Luo, J Gao, ... & H Hu

Water lily pond: a multiomics database for water lilies

C Zhao, J Zhang, Y Chen, L Yang, H Chen, Y Liang, W Wang, S He, ...

Pan-genome and Haplotype Map of Cassava Cultivars and Wild Ancestors Provide Insights into its Adaptive Evolution and Domestication

Z Xia, Z Du, X Zhou, S Jiang, T Zhu, L Wang, F Chen, L Carvalho, M Zou, ...

The genome of giant waterlilies provides insights into the origin of angiosperms, leaf gigantism, and stamen function innovation

X Wen, Y Liang, H Shan, X Chang, X Song, S Shen, Y Fu, D Chen, ...

PhyloForge: Unifying Micro‐and Macroevolution With Comprehensive Genomic Signals

Y Wang, W Dong, Y Liang, W Lin, J Chen, R Henry, F Chen

TropiCODB: A multi-omics resource for supporting biodesign in tropical crops

W Dai, S He, Y Luo, C Zhao, Z Yang, J Zhang, Q Wu, W Wang, F Chen

Functional analysis of MeFER4 in regulating ROS homeostasis during abiotic stress responses in Arabidopsis

M Zheng, J Li, C Lin, B Wang, P Zhao, F Yu, X Xie, M Peng, F Chen, C Si, ...

The sequence and expression analysis of anthocyanin synthase (ANS) genes in Nymphaea colorata with different flower colors

S Yang, WU Khan, J Zhang, J Zhang, Y Liang, Y Bai, F Chen

Chromosomal reference genome of Merremia boisiana: unveiling the secrets of the tropical rainforest's killer plant

G Guo, P García-Caparros, J Zhang, J Zhang, Y Li, S He, J Xue, F Chen, ...

Chromosome-level genome of Spathodea campanulata revealed genetic characteristics of malvidin and cyanidin accumulation in the corolla

S Wang, G Guo, J Zhang, W Wang, F Chen

Comprehensive identification, characterization and expression analyses of the class III POD gene family in water lily (Nymphaea colorata)

WU Khan, LU Khan, N Muhammad Khan, J Zhang, W Wang, F Chen

Artificial intelligence for life sciences: A comprehensive guide and future trends

Wang, X., Zhang, L., Li, H., Chen, W., ...

Multiomics Research: Principles and Challenges in Integrated Analysis

Y Luo, C Zhao, F Chen, ...

Evolutionary Insights and Expression Dynamics of the Glutathione Peroxidase (GPX) Gene Family in Water lily (Nymphaea colorata) in Response to Multiple Abiotic Stresses

WU Khan, LU Khan, NM Khan, W Wenquan, F Chen, ...

Transcriptome Profiling Implicates Non-Coding RNAs Involved in Flowering and Floral Organ Development in Water Lily

Hongbin Zhang,Chengjun Zhao, F Chen

The evolutionary tale of lilies: Giant genomes derived from transposon insertions and polyploidization

WU Khan, LU Khan, NM Khan, W Wenquan, F Chen, ...

CentIER: Accurate centromere identification for plant genomes

D Xu, J Yang, H Wen, W Feng, X Zhang, X Hui, J Yue, Y Xu, F Chen, ...

HortDB V1. 0: a genomic database of horticultural plants

Z Li, C Wang, S Wang, W Wang, F Chen, ...

The evolutionary significance of whole genome duplications in oil biosynthesis of oil crops

J Wu, L Zhang, X Ma, X Fu, F Chen, ...

PhyloForge: Unifying Micro‐and Macroevolution With Comprehensive Genomic Signals

Y Wang, W Dong, Y Liang, W Lin, J Chen, R Henry, F Chen, ...

Diploid wax apple (Syzygium samarangense) genome identified NAC genes regulating fruit development

J Zhang, Z Li, Y Liang, S He, G Guo, S Yang, F Chen, ...

DataColor: unveiling biological data relationships through distinctive color mapping

S He, W Dong, J Chen, J Zhang, W Lin, S Yang, D Xu, Y Zhou, B Miao, ...

A chromosome-level genome assembly of anesthetic drug–producing Anisodus acutangulus provides insights into its evolution and the biosynthesis of tropane alkaloids

W Zhou, C Wang, X Hao, F Chen, Q Huang, T Liu, J Xu, S Guo, B Liao, ...

Advancing tropical plant research: how the International Conference on Tropical Plants (ICTP) drives innovation and collaboration

X Zhang, W Wang, RJ Henry, F Chen

A comprehensive review on plant ascorbic acid

C Wang, P García-Caparros, Z Li, F Chen, ...

HBIcloud: An Integrative Multi-Omics Analysis Platform

S He, Y Luo, W Dong, W Wang, F Chen, ...

The genome assembly of Chimonanthus praecox var. concolor and comparative genomic analysis highlight the genetic basis underlying conserved and variable floral traits of wintersweet

Y Jiang, F Chen, A Song, Y Zhao, X Chen, Y Gao, G Wei, W Zhang, ...

Adaptive evolution of the enigmatic Takakia now facing climate change in Tibet

R Hu, X Li, Y Hu, R Zhang, Q Lv, M Zhang, X Sheng, F Zhao, Z Chen, ...

Genomic Analyses and New Breeding Technologies for the Enhancement of Horticultural Plants

F Chen, JY Xue

Genomics and Biotechnology Empower Plant Science Research

Y Liang, F Chen, JY Xue

Comprehensive regulatory networks for tomato organ development based on the genome and RNAome of MicroTom tomato

Jia-Yu Xue, Hai-Yun Fan, Zhen Zeng, Yu-Han Zhou, Shuai-Ya Hu, Sai-Xi Li, Ying-Juan Cheng, Xiang-Ru Meng, Fei Chen

Comparative analyses of superoxide dismutase (SOD) gene family and expression profiling under multiple abiotic stresses in water lilies

WU Khan, LU Khan, D Chen, F Chen

Analyses of a chromosome-scale genome assembly reveal the origin and evolution of cultivated chrysanthemum

A Song, J Su, H Wang, Z Zhang, X Zhang, Y Van de Peer, F Chen,...

The telomere-to-telomere genome of Fragaria vesca reveals the genomic evolution of Fragaria and the origin of cultivated octoploid strawberry

Y Zhou, J Xiong, Z Shu, C Dong, T Gu, P Sun, S He, M Jiang, Z Xia, J Xue,...

A novel genome sequence of Jasminum sambac helps uncover the molecular mechanism underlying the accumulation of jasmonates

Min Xu, Qiang Gao, Mengwei Jiang, Wenling Wang, Juan Hu, Xiaojun Chang, Dinggao Liu, Yuwei Liang, Yifan Jiang, Fei Chen,...

Large-scale analyses of angiosperm Flowering Locus T genes reveal duplication and functional divergence in monocots

Hongling Liu, Xing Liu, Xiaojun Chang, Fei Chen, Zhenguo Lin, Liangsheng Zhang,...

Large-scale analyses of angiosperm Flowering Locus T genes reveal duplication and functional divergence in monocots

Junyu Zhang, Shuang He, Wenquan Wang, Fei Chen, Zhidong Li,...

SCCGs_Prediction: a machine learning tool for prediction of sulfur-containing compound associated genes

S He, E Liu, F Chen, Z Li,...

Water lily research: Past, present, and future

X Xiong, J Zhang, Y Yang, Y Chen, Q Su, Y Zhao, J Wang, Z Xia, L Wang,...

The genome of Areca catechu provides insights into sex determination of monoecious plants

G Zhou, H Yin, F Chen, Y Wang, Q Gao, F Yang, C He, L Zhang, Y Wan,...

Phylogenomics as an effective approach to untangle cross-species hybridization event: A case study in the family Nymphaeaceae

L Cheng, Q Han, F Chen, M Li, TS Balbuena, Y Zhao,...

GROP: A genomic information repository for oilplants

W Guo, H Jin, J Chen, J Huang, D Zheng, Z Cheng, X Liu, Z Yang, F Chen,...

Dynamic regulation of volatile terpenoid production and emission from Chrysanthemum morifolium capitula

W Zhang, Y Jiang, F Chen, Z Guan, G Wei, X Chen, C Zhang, TG Köllner,...

Mitochondrial genes from 18 angiosperms fill sampling gaps for phylogenomic inferences of the early diversification of flowering plants

JY Xue, SS Dong, MQ Wang, TQ Song, GC Zhou, Z Li, Y Van de Peer,...

Genomes shed light on the evolution of Begonia, a mega‐diverse genus

L Li, X Chen, D Fang, S Dong, X Guo, N Li, L Campos‐Dominguez,...

De novo assembly of plant complete genomes

Yuhan Zhou1,2, Ji Zhang1,3, Xianghui Xiong1,3, Zong-Ming Cheng2 & Fei Chen,...

Plant genomes: toward goals of decoding both complex and complete sequences

F Chen

GDS: A Genomic Database for Strawberries (Fragaria spp.)

Y Zhou, Y Qiao, Z Ni, J Du, J Xiong, Z Cheng, F Chen,...

A chromosome-level genome assembly of rugged rose (Rosa rugosa) provides insights into its evolution, ecology, and floral characteristics

An ancient whole-genome duplication event and its contribution to flavor compounds in the tea plant (Camellia sinensis)

The genome of Magnolia biondii Pamp. provides insights into the evolution of Magnoliales and biosynthesis of terpenoids

High‐quality evergreen azalea genome reveals tandem duplication‐facilitated low‐altitude adaptability and floral scent evolution

A high‐quality Brassica napus genome reveals expansion of transposable elements, subgenome evolution and disease resistance

TeaPGDB: tea plant genome database