Malus_baccata_genome.fasta.gz
 Malus_baccata.gff.gz
 Malus_baccata_cds.fasta.gz
 Malus_baccata_pep.fasta.gz
Reference Publication(s):
 Chen X, Li S, Zhang D, et al. Sequencing of a Wild Apple (Malus baccata) Genome Unravels the Differences Between Cultivated and Wild Apple Species Regarding Disease Resistance and Cold Tolerance. G3 (Bethesda). 2019;9(7):2051-2060. Published 2019 Jul 9.
Download link:
https://www.rosaceae.org/species/malus_baccata/genome_v1.0
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 Malus_domestica_genome.fa.gz
 Malus_domestica.gff.gz
 Malus_domestica_cds.fa.gz
 Malus_domestica_pep.fa.gz
Reference Publication(s):
 Daccord N, Celton JM, Linsmith G, et al.High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development. Nat Genet. 2017;49(7):1099-1106. 
Download link:
https://www.rosaceae.org/tools/jbrowse
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 Malus_fusca_genome.fa.gz
 Malus_fusca.gff.gz
 Malus_fusca_cds.fa.gz
 Malus_fusca_pep.fa.gz
Reference Publication(s):
 Mansfeld BN, Yocca A, Ou S, et al.A haplotype resolved chromosome-scale assembly of North American wild apple Malus fusca and comparative genomics of the fire blight Mfu10 locus.Plant J. 2023;116(4):989-1002. 
Download link:
https://www.rosaceae.org/Analysis/15540543
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 Malus_sieversii_genome.fa.gz
 Malus_sieversii.gff.gz
 Malus_sieversii_cds.fa.gz
 Malus_sieversii_pep.fa.gz
Reference Publication(s):
 Sun X, Jiao C, Schwaninger H, et al. Phased diploid genome assemblies and pan-genomes provide insights into the genetic history of apple domestication. Nat Genet. 2020;52(12):1423-1432.
Download link:
https://www.rosaceae.org/Analysis/10635278